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In v2, customization is split across three control surfaces:

Choose the right surface

  • Use AGENTS.md or CLAUDE.md at any directory depth for durable policy shared with other coding agents.
  • Use CHARLIE.md at the repository root or under the root .agents/ tree for durable routing or instructions intended specifically for Charlie. It is not a confidentiality or repository-access boundary.
  • Use Skills for repeatable workflows invoked on demand.
  • Use Daemons for recurring automation (watch/schedule based).